Figure 3. Partial sequences of the four simple sequence loci. All sequences were aligned employing the T-Coffee multiple sequence alignment package. Microsatellite alleles are shown for (A) HaC14, (B,C) HaB60, (D) HaC87 and (E) HarSSR1. Bold letters indicate the location of the simple sequence repeat and the box-shaded regions indicate identities. A CORE index for each base position is indicated in the outlined box below each alignment. The primer sequences flanking the loci are shown in lowercase letters.