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Table 1. Best-hit BLAST homologues of sequences from the Swa I and Bsa AI libraries.*
Swa I
Clone**
Length
%G+C
Best-match Gene
Best-match Organism
Accession Number
Score
Similaritya
1
756
13%
rpl10 and rpl7
Carsonella ruddii AF274444
1 e-111
99/99
2
797
15%
metG
Escherichia coli K02671
5 e-12
32/57
3
686
13%
trpS
Carsonella ruddii AF211141
5 e-53
69/82
4
848
21%
carB
Buchnera aphidicola BP AE014016
2 e-42
72/90
5
643
14%
Cthe 2622
Clostridium thermocellum NZ_AAAJ01000154
2 e-10
46/69
6
326
13%
cls
Clostridium perfringens AB017186
9 e-6
22/32
7
640
16%
ilvE
Haemophilus influenzae U32798
4 e-6
23 / 37
8
636
25%
clpP
Buchnera aphidicola APS AP001119
2 e-55
88/119
9
636
25%
clpP
Buchnera aphidicola APS AP001119
2 e-55
88/119
10
682
19%
carB
Buchnera aphidicolaBP AE014016
5 e-41
79/101
11
553
14%
thdF
Ureaplasma urealyticum AE002101
2 e-8
37/64
12
430
13%
rpsM
Bacillus halodurons AP001507
8 e-9
44/76
13
531
11%
lysA
Campylobacter jejuni AL139074
2 e-4
31/56
14
408
11%
OB0096
Oceanobacillus iheyensis AP004593
7 e-4
26 / 47
15
641
13%
miaB2
Thermoanaero tengcongensis AE013095
3 e-17
36/66
16
226
12%
jhp 0254 (yleA)
Helicobacter pylori AE001463
3 e-6
33/47
17
333
14%
Chut 1228 (carB)
Cytophaga hutchinsonii AABE01000043
4 e-6
19/25
18
637
24%
rps7 and fusA
Carsonella ruddii AF274444
1 e-131
185/185
19
264
15%
Lmes 1055 (nifS)
Leuconostoc mesenteroides NZ_AAA001000023
2 e-11
42/61
20
264
15%
Lmes 1055 (nifS)
Leuconostoc mesenteroides NZ_AAA001000023
2 e-11
42/61
21
264
15%
Lmes 1055 nifS)
Leuconostoc mesenteroides NZ_AAA001000023
2 e-11
42/61
22
642
13%
Avin 1826 (argG)
Leuconostoc mesenteroides AAAD01000080
2 e-21
59/87
23
331
15%
sodA
Escherichia coli AP002567
3 e-13
41/63
24
637
11%
Psyr 0984 (glyRS)
Pseudomonas syringae AABH01000002
7 e-4
25/40
25
498
13%
aspS
Buchnera aphidicolaSG AE14107
7 e-21
57/89
26
449
16%
rpl7 and rpoB
Carsonella ruddii AF274444
3 e-82
106/107
27
449
16%
rpl7 and rpoB
Carsonella ruddii AF274444
3 e-82
106/107
Bsa AI
Clone***
Length
%G+C
Best-match Gene
Best-match Organism
Accession Number
Score
Similaritya
1
618
38%
tkt Carsonella ruddii
AF291051
2 e-34
17/17
2
649
16%
tkt Carsonella ruddii
AF291051
2 e-90
42/43
3
594
34%
23S rRNA Carsonella ruddii
BT001724
0
432/446
4
633
39%
23S rRNA Carsonella ruddii
AF211143
0
138/138
5
615
38%
tkt Carsonella ruddii
AF291051
1 e-55
40/50
6
556
35%
rps12 Carsonella ruddii
AF274444
2 e-53
47/47
7
633
18%
5S rRNA Acyrthosiphon magnoliae
AMRRNSS
8 e-17
85/95
8
737
41%
CG17417 Drosophila melanogaster
AE003089
1 e-4
27/40
*Longest match of amino acids (or nucleotides for RNA genes) between the query and reference sequences. Alignments may contain other regions of similarity.
**An additional 19 sequences had no hit with probability <e-2
***An additional 25 sequences had no hit with probability <e-2
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