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Table 1. Best-hit BLAST homologues of sequences from the Swa I and Bsa AI libraries.*
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| Swa I |
Clone** |
Length |
%G+C |
Best-match Gene |
Best-match Organism |
Accession Number |
Score |
Similaritya |
1 |
756 |
13% |
rpl10 and rpl7 |
Carsonella ruddii |
AF274444 |
1 e-111 |
99/99 |
2 |
797 |
15% |
metG |
Escherichia coli |
K02671 |
5 e-12 |
32/57 |
3 |
686 |
13% |
trpS |
Carsonella ruddii |
AF211141 |
5 e-53 |
69/82 |
4 |
848 |
21% |
carB |
Buchnera aphidicola BP |
AE014016 |
2 e-42 |
72/90 |
5 |
643 |
14% |
Cthe 2622 |
Clostridium thermocellum |
NZ_AAAJ01000154 |
2 e-10 |
46/69 |
6 |
326 |
13% |
cls |
Clostridium perfringens |
AB017186 |
9 e-6 |
22/32 |
7 |
640 |
16% |
ilvE |
Haemophilus influenzae |
U32798 |
4 e-6 |
23 / 37 |
8 |
636 |
25% |
clpP |
Buchnera aphidicola APS |
AP001119 |
2 e-55 |
88/119 |
9 |
636 |
25% |
clpP |
Buchnera aphidicola APS |
AP001119 |
2 e-55 |
88/119 |
10 |
682 |
19% |
carB |
Buchnera aphidicolaBP |
AE014016 |
5 e-41 |
79/101 |
11 |
553 |
14% |
thdF |
Ureaplasma urealyticum |
AE002101 |
2 e-8 |
37/64 |
12 |
430 |
13% |
rpsM |
Bacillus halodurons |
AP001507 |
8 e-9 |
44/76 |
13 |
531 |
11% |
lysA |
Campylobacter jejuni |
AL139074 |
2 e-4 |
31/56 |
14 |
408 |
11% |
OB0096 |
Oceanobacillus iheyensis |
AP004593 |
7 e-4 |
26 / 47 |
15 |
641 |
13% |
miaB2 |
Thermoanaero tengcongensis |
AE013095 |
3 e-17 |
36/66 |
16 |
226 |
12% |
jhp 0254 (yleA) |
Helicobacter pylori |
AE001463 |
3 e-6 |
33/47 |
17 |
333 |
14% |
Chut 1228 (carB) |
Cytophaga hutchinsonii |
AABE01000043 |
4 e-6 |
19/25 |
18 |
637 |
24% |
rps7 and fusA |
Carsonella ruddii |
AF274444 |
1 e-131 |
185/185 |
19 |
264 |
15% |
Lmes 1055 (nifS) |
Leuconostoc mesenteroides |
NZ_AAA001000023 |
2 e-11 |
42/61 |
20 |
264 |
15% |
Lmes 1055 (nifS) |
Leuconostoc mesenteroides |
NZ_AAA001000023 |
2 e-11 |
42/61 |
21 |
264 |
15% |
Lmes 1055 nifS) |
Leuconostoc mesenteroides |
NZ_AAA001000023 |
2 e-11 |
42/61 |
22 |
642 |
13% |
Avin 1826 (argG) |
Leuconostoc mesenteroides |
AAAD01000080 |
2 e-21 |
59/87 |
23 |
331 |
15% |
sodA |
Escherichia coli |
AP002567 |
3 e-13 |
41/63 |
24 |
637 |
11% |
Psyr 0984 (glyRS) |
Pseudomonas syringae |
AABH01000002 |
7 e-4 |
25/40 |
25 |
498 |
13% |
aspS |
Buchnera aphidicolaSG |
AE14107 |
7 e-21 |
57/89 |
26 |
449 |
16% |
rpl7 and rpoB |
Carsonella ruddii |
AF274444 |
3 e-82 |
106/107 |
27 |
449 |
16% |
rpl7 and rpoB |
Carsonella ruddii |
AF274444 |
3 e-82 |
106/107 |
|
| Bsa AI |
Clone*** |
Length |
%G+C |
Best-match Gene |
Best-match Organism |
Accession Number |
Score |
Similaritya |
1 |
618 |
38% |
tkt |
Carsonella ruddii |
AF291051 |
2 e-34 |
17/17 |
2 |
649 |
16% |
tkt |
Carsonella ruddii |
AF291051 |
2 e-90 |
42/43 |
3 |
594 |
34% |
23S rRNA |
Carsonella ruddii |
BT001724 |
0 |
432/446 |
4 |
633 |
39% |
23S rRNA |
Carsonella ruddii |
AF211143 |
0 |
138/138 |
5 |
615 |
38% |
tkt |
Carsonella ruddii |
AF291051 |
1 e-55 |
40/50 |
6 |
556 |
35% |
rps12 |
Carsonella ruddii |
AF274444 |
2 e-53 |
47/47 |
7 |
633 |
18% |
5S rRNA |
Acyrthosiphon magnoliae |
AMRRNSS |
8 e-17 |
85/95 |
8 |
737 |
41% |
CG17417 |
Drosophila melanogaster |
AE003089 |
1 e-4 |
27/40 |
|
*Longest match of amino acids (or nucleotides for RNA genes) between the query and reference sequences. Alignments may contain other regions of similarity.
**An additional 19 sequences had no hit with probability <e-2
***An additional 25 sequences had no hit with probability <e-2
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